All functions
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fwGenotypes()
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Forward-backward sampling for hidden Markov models for genotypes |
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fwHMM()
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Forward-backward sampling for hidden Markov models |
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fwHaplotypes()
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Forward-backward sampling for hidden Markov models for haplotypes |
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knockoffDMC()
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Group knockoffs of discrete Markov chains |
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knockoffGenotypes()
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Group-knockoffs of unphased genotypes |
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knockoffHMM()
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Group knockoffs of hidden Markov models |
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knockoffHaplotypes()
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Group-knockoffs of phased haplotypes |
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loadHMM()
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Load HMM parameters fitted by fastPHASE |
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runFastPhase()
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Fit an HMM to genetic data using fastPHASE |
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sampleDMC()
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Sample discrete Markov chains |
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sampleHMM()
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Sample hidden Markov models |
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writeXtoInp()
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Convert genotypes X into the fastPHASE input format |